PDB Entry (6umz) |
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PDB ID: 6umz | Resolution: 0.9 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32753830 | DOI: 10.1016/j.jphotochem.2020.112738 | |
Protein |
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Protein Name: Photoactive yellow protein | |
Uniprot ID/ACC: P16113 (PYP_HALHA) | Organism: Halorhodospira halophila (Ectothiorhodospira halophila) |
Gene Symbol: pyp | Gene ID: - |
Protein Class: SIGNALING PROTEIN |
Ligand |
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Ligand Name: 3-bromo-para-coumaric acid | ||
Canonical SMILES: OC(=O)\C=C\c1ccc(O)c(Br)c1 | ||
Standard InChI: InChI=1S/C9H7BrO3/c10-7-5-6(1-3-8(7)11)2-4-9(12)13/h1-5,11H,(H,12,13)/b4-2+ | ||
HET Code: QBV | PubChem: 12416133 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C9H7BrO3 | Mol. Weight: 241.95786 | logP: 2.2525 |
HBD: 2 | HBA: 2 | |
#Rotatable Bonds: 2 | TPSA: 57.53 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Acyl Substitution | CYS 69 | A | 35.02 | 11.33 | Carboxylic Acid |
Binding Affinity |
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