PDB Entry (6pum)
PDB ID: 6pum Resolution: 1.96 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32123373 DOI: 10.1038/s41590-020-0616-6
Protein
Protein Name: Major histocompatibility complex class I-related gene protein
Uniprot ID/ACC: Q95460 (HMR1_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: MR1 Gene ID: 3140
Protein Class: CELL CYCLE
Ligand
Ligand Name:   2'D-5-OP-RU
Canonical SMILES:   CC(=O)/C=N/c1c([nH]c(=O)[nH]c1=O)NCC[C@H](O)[C@H](O)CO
Standard InChI:   InChI=1S/C12H18N4O6/c1-6(18)4-14-9-10(15-12(22)16-11(9)21)13-3-2-7(19)8(20)5-17/h4,7-8,17,19-20H,2-3,5H2,1H3,(H3,13,15,16,21,22)/b14-4+/t7-,8+/m0/s1
HET Code:   Q84 PubChem:   145946124
DrugBank:   - ChEMBL:   -
Molecular Formula:   C12H18N4O6 Mol. Weight:   314.12262 logP:   -2.1294
HBD:   6 HBA:   8
#Rotatable Bonds:   8 TPSA:   167.87
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Imine Condensation LYS 43 C 15.69 - Ketone
Binding Affinity
-