PDB Entry (1sde) |
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PDB ID: 1sde | Resolution: 1.15 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 15170342 | DOI: 10.1021/bi049612c | |
Protein |
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Protein Name: D-alanyl-D-alanine carboxypeptidase | |
Uniprot ID/ACC: P15555 (DAC_STRSR) | Organism: Streptomyces sp. (strain R61) |
Gene Symbol: - | Gene ID: - |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: 2,4‐dioxo‐1,3,2lambda5‐benzodioxaphosphinin‐2‐olate | ||
Canonical SMILES: OP1(=O)OC(=O)c2ccccc2O1 | ||
Standard InChI: InChI=1S/C7H5O5P/c8-7-5-3-1-2-4-6(5)11-13(9,10)12-7/h1-4H,(H,9,10) | ||
HET Code: 2PB | PubChem: 9837075 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C7H5O5P | Mol. Weight: 199.98746 | logP: 1.3362 |
HBD: 1 | HBA: 4 | |
#Rotatable Bonds: 0 | TPSA: 72.83 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Ring Opening | SER 62 | A | 18.99 | - | 1-Hydroxy-2,6-Dioxa-3-Oxophosphorinone |
Binding Affinity |
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