PDB Entry (1sde)
PDB ID: 1sde Resolution: 1.15 Å Exp. Method: X-RAY DIFFRACTION
PMID: 15170342 DOI: 10.1021/bi049612c
Protein
Protein Name: D-alanyl-D-alanine carboxypeptidase
Uniprot ID/ACC: P15555 (DAC_STRSR) Organism: Streptomyces sp. (strain R61)
Gene Symbol: - Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   2,4‐dioxo‐1,3,2lambda5‐benzodioxaphosphinin‐2‐olate
Canonical SMILES:   OP1(=O)OC(=O)c2ccccc2O1
Standard InChI:   InChI=1S/C7H5O5P/c8-7-5-3-1-2-4-6(5)11-13(9,10)12-7/h1-4H,(H,9,10)
HET Code:   2PB PubChem:   9837075
DrugBank:   - ChEMBL:   -
Molecular Formula:   C7H5O5P Mol. Weight:   199.98746 logP:   1.3362
HBD:   1 HBA:   4
#Rotatable Bonds:   0 TPSA:   72.83
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Ring Opening SER 62 A 18.99 - 1-Hydroxy-2,6-Dioxa-3-Oxophosphorinone
Binding Affinity
-