PDB Entry (2zk2) |
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PDB ID: 2zk2 | Resolution: 2.26 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 18977231 | DOI: 10.1016/j.jmb.2008.10.039 | |
Protein |
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Protein Name: Peroxisome proliferator-activated receptor gamma | |
Uniprot ID/ACC: P37231 (PPARG_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: PPARG | Gene ID: 5468 |
Protein Class: TRANSCRIPTION REGULATOR |
Ligand |
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Ligand Name: 15-deoxy-delta12,14-prostaglandin J2 | ||
Canonical SMILES: CCCCC\C=C\C=C1/[C@@H](C\C=C\CCCC(O)=O)C=CC1=O | ||
Standard InChI: InChI=1S/C20H28O3/c1-2-3-4-5-6-10-13-18-17(15-16-19(18)21)12-9-7-8-11-14-20(22)23/h6-7,9-10,13,15-17H,2-5,8,11-12,14H2,1H3,(H,22,23)/b9-7+,10-6+,18-13+/t17-/m0/s1 | ||
HET Code: PTG | PubChem: 12068863 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C20H28O3 | Mol. Weight: 316.20386 | logP: 5.0056 |
HBD: 1 | HBA: 2 | |
#Rotatable Bonds: 11 | TPSA: 54.37 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Michael Addition | CYS 285 | A | 70.43 | 14.2 | Vinyl Carbonyl |
Binding Affinity |
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