PDB Entry (3bh3) |
||
| ||
PDB ID: 3bh3 | Resolution: 2.1 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 19458715 | DOI: 10.1038/nature07938 | |
Protein |
|
Protein Name: Probable acetoacetate decarboxylase | |
Uniprot ID/ACC: Q7NSA6 (ADC_CHRVO) | Organism: Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) |
Gene Symbol: adc | Gene ID: - |
Protein Class: LYASE |
Ligand |
||
Ligand Name: acetylacetone | ||
Canonical SMILES: CC(=O)CC(=O)C | ||
Standard InChI: InChI=1S/C5H8O2/c1-4(6)3-5(2)7/h3H2,1-2H3 | ||
HET Code: PNH | PubChem: 31261 | |
DrugBank: - | ChEMBL: CHEMBL191625 | |
Molecular Formula: C5H8O2 | Mol. Weight: 100.05243 | logP: 0.5545 |
HBD: 0 | HBA: 2 | |
#Rotatable Bonds: 2 | TPSA: 34.14 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Imine Condensation | LYS 116 | A | 12.41 | 5.0 | Ketone |
Binding Affinity |
|
Database Name | Value |
PDBBind | Ki : 700 nM |