PDB Entry (3bh3)
PDB ID: 3bh3 Resolution: 2.1 Å Exp. Method: X-RAY DIFFRACTION
PMID: 19458715 DOI: 10.1038/nature07938
Protein
Protein Name: Probable acetoacetate decarboxylase
Uniprot ID/ACC: Q7NSA6 (ADC_CHRVO) Organism: Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)
Gene Symbol: adc Gene ID: -
Protein Class: LYASE
Ligand
Ligand Name:   acetylacetone
Canonical SMILES:   CC(=O)CC(=O)C
Standard InChI:   InChI=1S/C5H8O2/c1-4(6)3-5(2)7/h3H2,1-2H3
HET Code:   PNH PubChem:   31261
DrugBank:   - ChEMBL:   CHEMBL191625
Molecular Formula:   C5H8O2 Mol. Weight:   100.05243 logP:   0.5545
HBD:   0 HBA:   2
#Rotatable Bonds:   2 TPSA:   34.14
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Imine Condensation LYS 116 A 12.41 5.0 Ketone
Binding Affinity
Database Name Value
PDBBind Ki : 700 nM