PDB Entry (2jch)
PDB ID: 2jch Resolution: 2.4 Å Exp. Method: X-RAY DIFFRACTION
PMID: 17676039 DOI: 10.1038/NCHEMBIO.2007.21
Protein
Protein Name: DD-transpeptidase
Uniprot ID/ACC: O70038 (O70038_STREE) Organism: Streptococcus pneumoniae
Gene Symbol: pbp1b Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   PHENOXYACETYL LACTIVICIN
Canonical SMILES:   OC(=O)[C@@]1(CCC(=O)O1)N1OC[C@H](NC(=O)COc2ccccc2)C1=O
Standard InChI:   InChI=1S/C16H16N2O8/c19-12(9-24-10-4-2-1-3-5-10)17-11-8-25-18(14(11)21)16(15(22)23)7-6-13(20)26-16/h1-5,11H,6-9H2,(H,17,19)(H,22,23)/t11-,16-/m0/s1
HET Code:   PL7 PubChem:   49864512
DrugBank:   - ChEMBL:   CHEMBL1221990
Molecular Formula:   C16H16N2O8 Mol. Weight:   364.09067 logP:   -0.5581
HBD:   2 HBA:   7
#Rotatable Bonds:   6 TPSA:   131.47
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Ring Opening SER 460 A 15.31 - Isoxazolidin-3-one
Binding Affinity
-