PDB Entry (6vim)
PDB ID: 6vim Resolution: 2.0 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32786399 DOI: 10.1021/acs.biochem.0c00478
Protein
Protein Name: Mandelate racemase
Uniprot ID/ACC: P11444 (MANR_PSEPU) Organism: Pseudomonas putida (Arthrobacter siderocapsulatus)
Gene Symbol: mdlA Gene ID: 45526288
Protein Class: ISOMERASE
Ligand
Ligand Name:   PHENYL BORONIC ACID
Canonical SMILES:   OB(O)c1ccccc1
Standard InChI:   InChI=1S/C6H7BO2/c8-7(9)6-4-2-1-3-5-6/h1-5,8-9H
HET Code:   PBC PubChem:   66827
DrugBank:   DB01795 ChEMBL:   CHEMBL21485
Molecular Formula:   C6H7BO2 Mol. Weight:   122.05391 logP:   -0.6336
HBD:   2 HBA:   2
#Rotatable Bonds:   1 TPSA:   40.46
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Borylation HIS 297 F 8.33 2.47 Boronic Acid
Binding Affinity
-