PDB Entry (6vim) |
||
| ||
PDB ID: 6vim | Resolution: 2.0 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32786399 | DOI: 10.1021/acs.biochem.0c00478 | |
Protein |
|
Protein Name: Mandelate racemase | |
Uniprot ID/ACC: P11444 (MANR_PSEPU) | Organism: Pseudomonas putida (Arthrobacter siderocapsulatus) |
Gene Symbol: mdlA | Gene ID: 45526288 |
Protein Class: ISOMERASE |
Ligand |
||
Ligand Name: PHENYL BORONIC ACID | ||
Canonical SMILES: OB(O)c1ccccc1 | ||
Standard InChI: InChI=1S/C6H7BO2/c8-7(9)6-4-2-1-3-5-6/h1-5,8-9H | ||
HET Code: PBC | PubChem: 66827 | |
DrugBank: DB01795 | ChEMBL: CHEMBL21485 | |
Molecular Formula: C6H7BO2 | Mol. Weight: 122.05391 | logP: -0.6336 |
HBD: 2 | HBA: 2 | |
#Rotatable Bonds: 1 | TPSA: 40.46 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Borylation | HIS 297 | F | 8.33 | 2.47 | Boronic Acid |
Binding Affinity |
||
- |