PDB Entry (1pv8)
PDB ID: 1pv8 Resolution: 2.2 Å Exp. Method: X-RAY DIFFRACTION
PMID: 12897770 DOI: 10.1038/nsb963
Protein
Protein Name: Delta-aminolevulinic acid dehydratase
Uniprot ID/ACC: P13716 (HEM2_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: ALAD Gene ID: 210
Protein Class: LYASE
Ligand
Ligand Name:   (3Z)‐3‐(2‐aminoacetyl)‐4‐(aminomethyl)hept‐3‐enedioic acid
Canonical SMILES:   NCC(=O)C(\CC(O)=O)=C(/CN)CCC(O)=O
Standard InChI:   InChI=1S/C10H16N2O5/c11-4-6(1-2-9(14)15)7(3-10(16)17)8(13)5-12/h1-5,11-12H2,(H,14,15)(H,16,17)/b7-6-
HET Code:   PB1 PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C10H16N2O5 Mol. Weight:   244.10593 logP:   -0.891
HBD:   4 HBA:   5
#Rotatable Bonds:   8 TPSA:   143.71
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Composite Reaction LYS 252 A 12.45 4.01 Vinyl Carbonyl
Composite Reaction LYS 199 A 72.78 7.08 Vinyl Carbonyl
Binding Affinity
-