PDB Entry (6ynq)
PDB ID: 6ynq Resolution: 1.8 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: 10.1101/2020.11.12.378422
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   2-Methylenetetralone
Canonical SMILES:   O=C1C(=C)CCc(c12)cccc2
Standard InChI:   InChI=1S/C11H10O/c1-8-6-7-9-4-2-3-5-10(9)11(8)12/h2-5H,1,6-7H2
HET Code:   P6N PubChem:   377751
DrugBank:   - ChEMBL:   CHEMBL188064
Molecular Formula:   C11H10O Mol. Weight:   158.07317 logP:   2.3717
HBD:   0 HBA:   1
#Rotatable Bonds:   0 TPSA:   17.07
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 145 A 23.0 13.25 Vinyl Carbonyl
Binding Affinity
-