PDB Entry (6ynq) |
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PDB ID: 6ynq | Resolution: 1.8 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: 10.1101/2020.11.12.378422 | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: 2-Methylenetetralone | ||
Canonical SMILES: O=C1C(=C)CCc(c12)cccc2 | ||
Standard InChI: InChI=1S/C11H10O/c1-8-6-7-9-4-2-3-5-10(9)11(8)12/h2-5H,1,6-7H2 | ||
HET Code: P6N | PubChem: 377751 | |
DrugBank: - | ChEMBL: CHEMBL188064 | |
Molecular Formula: C11H10O | Mol. Weight: 158.07317 | logP: 2.3717 |
HBD: 0 | HBA: 1 | |
#Rotatable Bonds: 0 | TPSA: 17.07 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Michael Addition | CYS 145 | A | 23.0 | 13.25 | Vinyl Carbonyl |
Binding Affinity |
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