PDB Entry (4nme)
PDB ID: 4nme Resolution: 2.09 Å Exp. Method: X-RAY DIFFRACTION
PMID: 24550478 DOI: 10.1073/pnas.1321621111
Protein
Protein Name: Bifunctional protein PutA
Uniprot ID/ACC: Q746X3 (Q746X3_GEOSL) Organism: Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
Gene Symbol: putA Gene ID: -
Protein Class: OXIDOREDUCTASE
Ligand
Ligand Name:   N‐propargylglycine
Canonical SMILES:   OC(=O)CNCC#C
Standard InChI:   InChI=1S/C5H7NO2/c1-2-3-6-4-5(7)8/h1,6H,3-4H2,(H,7,8)
HET Code:   P5F PubChem:   185909
DrugBank:   - ChEMBL:   CHEMBL1993296
Molecular Formula:   C5H7NO2 Mol. Weight:   113.047676 logP:   -0.7062
HBD:   2 HBA:   2
#Rotatable Bonds:   3 TPSA:   49.33
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Composite Reaction LYS 203 A 67.42 10.68 Alkyne
Binding Affinity
-