PDB Entry (4nme) |
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PDB ID: 4nme | Resolution: 2.09 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 24550478 | DOI: 10.1073/pnas.1321621111 | |
Protein |
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Protein Name: Bifunctional protein PutA | |
Uniprot ID/ACC: Q746X3 (Q746X3_GEOSL) | Organism: Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) |
Gene Symbol: putA | Gene ID: - |
Protein Class: OXIDOREDUCTASE |
Ligand |
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Ligand Name: N‐propargylglycine | ||
Canonical SMILES: OC(=O)CNCC#C | ||
Standard InChI: InChI=1S/C5H7NO2/c1-2-3-6-4-5(7)8/h1,6H,3-4H2,(H,7,8) | ||
HET Code: P5F | PubChem: 185909 | |
DrugBank: - | ChEMBL: CHEMBL1993296 | |
Molecular Formula: C5H7NO2 | Mol. Weight: 113.047676 | logP: -0.7062 |
HBD: 2 | HBA: 2 | |
#Rotatable Bonds: 3 | TPSA: 49.33 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Composite Reaction | LYS 203 | A | 67.42 | 10.68 | Alkyne |
Binding Affinity |
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