PDB Entry (5ur2) |
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PDB ID: 5ur2 | Resolution: 2.23 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 28710792 | DOI: 10.1111/febs.14165 | |
Protein |
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Protein Name: Bifunctional protein PutA | |
Uniprot ID/ACC: Q6MNK1 (Q6MNK1_BDEBA) | Organism: Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIMB 9529 / HD100) |
Gene Symbol: putA | Gene ID: - |
Protein Class: OXIDOREDUCTASE |
Ligand |
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Ligand Name: N‐propargylglycine | ||
Canonical SMILES: OC(=O)CNCC#C | ||
Standard InChI: InChI=1S/C5H7NO2/c1-2-3-6-4-5(7)8/h1,6H,3-4H2,(H,7,8) | ||
HET Code: P5F | PubChem: 185909 | |
DrugBank: - | ChEMBL: CHEMBL1993296 | |
Molecular Formula: C5H7NO2 | Mol. Weight: 113.047676 | logP: -0.7062 |
HBD: 2 | HBA: 2 | |
#Rotatable Bonds: 3 | TPSA: 49.33 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Composite Reaction | LYS 196 | A | 65.66 | 10.86 | Alkyne |
Binding Affinity |
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