PDB Entry (5ur2)
PDB ID: 5ur2 Resolution: 2.23 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28710792 DOI: 10.1111/febs.14165
Protein
Protein Name: Bifunctional protein PutA
Uniprot ID/ACC: Q6MNK1 (Q6MNK1_BDEBA) Organism: Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIMB 9529 / HD100)
Gene Symbol: putA Gene ID: -
Protein Class: OXIDOREDUCTASE
Ligand
Ligand Name:   N‐propargylglycine
Canonical SMILES:   OC(=O)CNCC#C
Standard InChI:   InChI=1S/C5H7NO2/c1-2-3-6-4-5(7)8/h1,6H,3-4H2,(H,7,8)
HET Code:   P5F PubChem:   185909
DrugBank:   - ChEMBL:   CHEMBL1993296
Molecular Formula:   C5H7NO2 Mol. Weight:   113.047676 logP:   -0.7062
HBD:   2 HBA:   2
#Rotatable Bonds:   3 TPSA:   49.33
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Composite Reaction LYS 196 A 65.66 10.86 Alkyne
Binding Affinity
-