PDB Entry (6puk)
PDB ID: 6puk Resolution: 2.08 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32123373 DOI: 10.1038/s41590-020-0616-6
Protein
Protein Name: Major histocompatibility complex class I-related gene protein
Uniprot ID/ACC: Q95460 (HMR1_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: MR1 Gene ID: 3140
Protein Class: CELL CYCLE
Ligand
Ligand Name:   JYM72
Canonical SMILES:   CC(=O)/C=C/c1c([nH]c(=O)[nH]c1=O)CC[C@H](O)[C@H](O)[C@H](O)CO
Standard InChI:   InChI=1S/C14H20N2O7/c1-7(18)2-3-8-9(15-14(23)16-13(8)22)4-5-10(19)12(21)11(20)6-17/h2-3,10-12,17,19-21H,4-6H2,1H3,(H2,15,16,22,23)/b3-2+/t10-,11+,12-/m0/s1
HET Code:   OYV PubChem:   118429016
DrugBank:   - ChEMBL:   -
Molecular Formula:   C14H20N2O7 Mol. Weight:   328.12704 logP:   -2.327
HBD:   6 HBA:   7
#Rotatable Bonds:   8 TPSA:   163.71
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Imine Condensation LYS 43 A 19.7 - Ketone
Binding Affinity
-