PDB Entry (6puh)
PDB ID: 6puh Resolution: 1.88 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32123373 DOI: 10.1038/s41590-020-0616-6
Protein
Protein Name: Major histocompatibility complex class I-related gene protein
Uniprot ID/ACC: Q95460 (HMR1_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: MR1 Gene ID: 3140
Protein Class: CELL CYCLE
Ligand
Ligand Name:   6-methyl-5-[(1E)-3-oxobut-1-en-1-yl]pyrimidine-2,4(1H,3H)-dione
Canonical SMILES:   CC(=O)/C=C/c1c(C)[nH]c(=O)[nH]c1=O
Standard InChI:   InChI=1S/C9H10N2O3/c1-5(12)3-4-7-6(2)10-9(14)11-8(7)13/h3-4H,1-2H3,(H2,10,11,13,14)/b4-3+
HET Code:   OYG PubChem:   145946112
DrugBank:   - ChEMBL:   -
Molecular Formula:   C9H10N2O3 Mol. Weight:   194.06914 logP:   -0.02618
HBD:   2 HBA:   3
#Rotatable Bonds:   2 TPSA:   82.79
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Imine Condensation LYS 43 A 15.8 5.39 Ketone
Binding Affinity
-