PDB Entry (6puh) |
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PDB ID: 6puh | Resolution: 1.88 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32123373 | DOI: 10.1038/s41590-020-0616-6 | |
Protein |
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Protein Name: Major histocompatibility complex class I-related gene protein | |
Uniprot ID/ACC: Q95460 (HMR1_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: MR1 | Gene ID: 3140 |
Protein Class: CELL CYCLE |
Ligand |
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Ligand Name: 6-methyl-5-[(1E)-3-oxobut-1-en-1-yl]pyrimidine-2,4(1H,3H)-dione | ||
Canonical SMILES: CC(=O)/C=C/c1c(C)[nH]c(=O)[nH]c1=O | ||
Standard InChI: InChI=1S/C9H10N2O3/c1-5(12)3-4-7-6(2)10-9(14)11-8(7)13/h3-4H,1-2H3,(H2,10,11,13,14)/b4-3+ | ||
HET Code: OYG | PubChem: 145946112 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C9H10N2O3 | Mol. Weight: 194.06914 | logP: -0.02618 |
HBD: 2 | HBA: 3 | |
#Rotatable Bonds: 2 | TPSA: 82.79 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Imine Condensation | LYS 43 | A | 15.8 | 5.39 | Ketone |
Binding Affinity |
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