PDB Entry (6pud)
PDB ID: 6pud Resolution: 1.8 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32123373 DOI: 10.1038/s41590-020-0616-6
Protein
Protein Name: Major histocompatibility complex class I-related gene protein
Uniprot ID/ACC: Q95460 (HMR1_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: MR1 Gene ID: 3140
Protein Class: CELL CYCLE
Ligand
Ligand Name:   5'-OH-pentyl-5-OP-RU
Canonical SMILES:   CC(=O)/C=N/c1c([nH]c(=O)[nH]c1=O)NCCCCCO
Standard InChI:   InChI=1S/C12H18N4O4/c1-8(18)7-14-9-10(13-5-3-2-4-6-17)15-12(20)16-11(9)19/h7,17H,2-6H2,1H3,(H3,13,15,16,19,20)/b14-7+
HET Code:   OYD PubChem:   144935291
DrugBank:   - ChEMBL:   -
Molecular Formula:   C12H18N4O4 Mol. Weight:   282.1328 logP:   -0.071
HBD:   4 HBA:   6
#Rotatable Bonds:   8 TPSA:   127.41
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Imine Condensation LYS 43 A 18.0 - Ketone
Binding Affinity
-