PDB Entry (6ylk) |
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PDB ID: 6ylk | Resolution: 1.65 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32659037 | DOI: 10.1002/cbic.202000457 | |
Protein |
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Protein Name: Cyclin-dependent kinase 2 | |
Uniprot ID/ACC: P24941 (CDK2_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: CDK2 | Gene ID: 1017 |
Protein Class: TRANSFERASE |
Ligand |
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Ligand Name: TK22 | ||
Canonical SMILES: COC(=O)c(c1)ccc(c12)N(C(=O)C=C)CCN2CC | ||
Standard InChI: InChI=1S/C15H18N2O3/c1-4-14(18)17-9-8-16(5-2)13-10-11(15(19)20-3)6-7-12(13)17/h4,6-7,10H,1,5,8-9H2,2-3H3 | ||
HET Code: OY2 | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C15H18N2O3 | Mol. Weight: 274.13174 | logP: 1.8321 |
HBD: 0 | HBA: 4 | |
#Rotatable Bonds: 3 | TPSA: 49.85 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Michael Addition | CYS 80 | A | 27.99 | 12.58 | Vinyl Carbonyl |
Binding Affinity |
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