PDB Entry (6ylk)
PDB ID: 6ylk Resolution: 1.65 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32659037 DOI: 10.1002/cbic.202000457
Protein
Protein Name: Cyclin-dependent kinase 2
Uniprot ID/ACC: P24941 (CDK2_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: CDK2 Gene ID: 1017
Protein Class: TRANSFERASE
Ligand
Ligand Name:   TK22
Canonical SMILES:   COC(=O)c(c1)ccc(c12)N(C(=O)C=C)CCN2CC
Standard InChI:   InChI=1S/C15H18N2O3/c1-4-14(18)17-9-8-16(5-2)13-10-11(15(19)20-3)6-7-12(13)17/h4,6-7,10H,1,5,8-9H2,2-3H3
HET Code:   OY2 PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C15H18N2O3 Mol. Weight:   274.13174 logP:   1.8321
HBD:   0 HBA:   4
#Rotatable Bonds:   3 TPSA:   49.85
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 80 A 27.99 12.58 Vinyl Carbonyl
Binding Affinity
-