PDB Entry (6yl1)
PDB ID: 6yl1 Resolution: 1.66 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32659037 DOI: 10.1002/cbic.202000457
Protein
Protein Name: Cyclin-dependent kinase 2
Uniprot ID/ACC: P24941 (CDK2_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: CDK2 Gene ID: 1017
Protein Class: TRANSFERASE
Ligand
Ligand Name:   F80C
Canonical SMILES:   COC(=O)c(c1)ccc(c12)N(C(=O)C=C)CCN2CC3CC3
Standard InChI:   InChI=1S/C17H20N2O3/c1-3-16(20)19-9-8-18(11-12-4-5-12)15-10-13(17(21)22-2)6-7-14(15)19/h3,6-7,10,12H,1,4-5,8-9,11H2,2H3
HET Code:   OWN PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C17H20N2O3 Mol. Weight:   300.1474 logP:   2.2222
HBD:   0 HBA:   4
#Rotatable Bonds:   4 TPSA:   49.85
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 80 A 28.43 13.55 Vinyl Carbonyl
Binding Affinity
-