PDB Entry (5ykp)
PDB ID: 5ykp Resolution: 1.68 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30837307 DOI: 10.1042/BCJ20180874
Protein
Protein Name: Methionine aminopeptidase 1
Uniprot ID/ACC: P53582 (MAP11_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: METAP1 Gene ID: 23173
Protein Class: HYDROLASE
Ligand
Ligand Name:   OVALICIN
Canonical SMILES:   C[C@@]1(O)CCC(=O)[C@@H](OC)[C@]1(O)[C@@]2(C)O[C@@H]2CC=C(C)C
Standard InChI:   InChI=1S/C16H26O5/c1-10(2)6-7-12-15(4,21-12)16(19)13(20-5)11(17)8-9-14(16,3)18/h6,12-13,18-19H,7-9H2,1-5H3/t12-,13-,14-,15+,16-/m1/s1
HET Code:   OVA PubChem:   5289086
DrugBank:   DB04324 ChEMBL:   CHEMBL1235035
Molecular Formula:   C16H26O5 Mol. Weight:   298.178 logP:   1.3602
HBD:   2 HBA:   5
#Rotatable Bonds:   4 TPSA:   79.29
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemiaminalization HIS 212 A 57.71 1.52 Ketone
Binding Affinity
-