PDB Entry (1htp)
PDB ID: 1htp Resolution: 2.2 Å Exp. Method: X-RAY DIFFRACTION
PMID: 7719855 DOI: 10.1038/nsb0195-63
Protein
Protein Name: Glycine cleavage system H protein, mitochondrial
Uniprot ID/ACC: P16048 (GCSH_PEA) Organism: Pisum sativum (Garden pea)
Gene Symbol: GDCSH Gene ID: -
Protein Class: OXIDOREDUCTASE
Ligand
Ligand Name:   6-(HYDROXYETHYLDITHIO)-8-(AMINOMETHYLTHIO)OCTANOIC ACID
Canonical SMILES:   NCSCC[C@H](CCCCC(O)=O)SSCCO
Standard InChI:   InChI=1S/C11H23NO3S3/c12-9-16-7-5-10(18-17-8-6-13)3-1-2-4-11(14)15/h10,13H,1-9,12H2,(H,14,15)/t10-/m0/s1
HET Code:   OSS PubChem:   5289084
DrugBank:   DB03187 ChEMBL:   CHEMBL1235026
Molecular Formula:   C11H23NO3S3 Mol. Weight:   313.084 logP:   2.4132
HBD:   3 HBA:   6
#Rotatable Bonds:   13 TPSA:   83.55
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Acyl Substitution LYS 63 A 138.33 9.77 Carboxylic Acid
Binding Affinity
-