PDB Entry (6ygv) |
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PDB ID: 6ygv | Resolution: 1.63 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: - | |
Protein |
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Protein Name: Queuine tRNA-ribosyltransferase | |
Uniprot ID/ACC: P28720 (TGT_ZYMMO) | Organism: Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) |
Gene Symbol: tgt | Gene ID: - |
Protein Class: TRANSFERASE |
Ligand |
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Ligand Name: (E)-N-ethyl-4-oxo-4-phenylbut-2-enamide | ||
Canonical SMILES: CCNC(=O)/C=C/C(=O)c1ccccc1 | ||
Standard InChI: InChI=1S/C12H13NO2/c1-2-13-12(15)9-8-11(14)10-6-4-3-5-7-10/h3-9H,2H2,1H3,(H,13,15)/b9-8+ | ||
HET Code: OQH | PubChem: 135391299 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C12H13NO2 | Mol. Weight: 203.09464 | logP: 1.5616 |
HBD: 1 | HBA: 2 | |
#Rotatable Bonds: 4 | TPSA: 46.17 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Michael Addition | CYS 330 | A | 43.32 | 11.16 | Vinyl Carbonyl |
Binding Affinity |
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