PDB Entry (6ygv)
PDB ID: 6ygv Resolution: 1.63 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: -
Protein
Protein Name: Queuine tRNA-ribosyltransferase
Uniprot ID/ACC: P28720 (TGT_ZYMMO) Organism: Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
Gene Symbol: tgt Gene ID: -
Protein Class: TRANSFERASE
Ligand
Ligand Name:   (E)-N-ethyl-4-oxo-4-phenylbut-2-enamide
Canonical SMILES:   CCNC(=O)/C=C/C(=O)c1ccccc1
Standard InChI:   InChI=1S/C12H13NO2/c1-2-13-12(15)9-8-11(14)10-6-4-3-5-7-10/h3-9H,2H2,1H3,(H,13,15)/b9-8+
HET Code:   OQH PubChem:   135391299
DrugBank:   - ChEMBL:   -
Molecular Formula:   C12H13NO2 Mol. Weight:   203.09464 logP:   1.5616
HBD:   1 HBA:   2
#Rotatable Bonds:   4 TPSA:   46.17
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 330 A 43.32 11.16 Vinyl Carbonyl
Binding Affinity
-