PDB Entry (6yeo)
PDB ID: 6yeo Resolution: 2.04 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32545682 DOI: 10.3390/biom10060899
Protein
Protein Name: Beta-lactamase
Uniprot ID/ACC: P00811 (AMPC_ECOLI) Organism: Escherichia coli (strain K12)
Gene Symbol: ampC Gene ID: 948669
Protein Class: HYDROLASE
Ligand
Ligand Name:   CB2
Canonical SMILES:   NCc1ccc(cc1)C(=O)N[C@H]1Cc2cccc(C(O)=O)c2OB1O
Standard InChI:   InChI=1S/C17H17BN2O5/c19-9-10-4-6-11(7-5-10)16(21)20-14-8-12-2-1-3-13(17(22)23)15(12)25-18(14)24/h1-7,14,24H,8-9,19H2,(H,20,21)(H,22,23)/t14-/m0/s1
HET Code:   OK3 PubChem:   142473761
DrugBank:   - ChEMBL:   CHEMBL4533632
Molecular Formula:   C17H17BN2O5 Mol. Weight:   340.12305 logP:   0.5967
HBD:   4 HBA:   5
#Rotatable Bonds:   4 TPSA:   121.88
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Borylation SER 64 A 13.85 - Boronic Acid
Binding Affinity
-