PDB Entry (3u1i)
PDB ID: 3u1i Resolution: 2.3 Å Exp. Method: X-RAY DIFFRACTION
PMID: 22031935 DOI: 10.1128/JVI.06225-11
Protein
Protein Name: Genome polyprotein
Uniprot ID/ACC: Q5UB51 (POLG_DEN3I) Organism: Dengue virus type 3 (strain Singapore/8120/1995) (DENV-3)
Gene Symbol: - Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   N-benzoyl-L-norleucyl-6-ammonio-L-norleucyl-N~5~-[amino(iminio)methyl]-N-[(2S)-5-carbamimidamido-1-oxopentan-2-yl]-L-ornithinamide
Canonical SMILES:   CCCC[C@H](NC(=O)c1ccccc1)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](CCCNC(N)=N)C=O
Standard InChI:   InChI=1S/C31H53N11O5/c1-2-3-14-23(40-26(44)21-11-5-4-6-12-21)28(46)41-24(15-7-8-17-32)29(47)42-25(16-10-19-38-31(35)36)27(45)39-22(20-43)13-9-18-37-30(33)34/h4-6,11-12,20,22-25H,2-3,7-10,13-19,32H2,1H3,(H,39,45)(H,40,44)(H,41,46)(H,42,47)(H4,33,34,37)(H4,35,36,38)/t22-,23-,24-,25-/m0/s1
HET Code:   OAR PubChem:   6857723
DrugBank:   - ChEMBL:   CHEMBL256877
Molecular Formula:   C31H53N11O5 Mol. Weight:   659.4231 logP:   -0.71596
HBD:   11 HBA:   8
#Rotatable Bonds:   24 TPSA:   283.29
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization SER 135 B 12.81 - Aldehyde
Binding Affinity
-