PDB Entry (4nqe)
PDB ID: 4nqe Resolution: 2.1 Å Exp. Method: X-RAY DIFFRACTION
PMID: 24695216 DOI: 10.1038/nature13160
Protein
Protein Name: Major histocompatibility complex class I-related gene protein
Uniprot ID/ACC: Q95460 (HMR1_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: MR1 Gene ID: 3140
Protein Class: CELL CYCLE
Ligand
Ligand Name:   1-deoxy-1-({2,6-dioxo-5-[(E)-(2-oxoethylidene)amino]-1,2,3,6-tetrahydropyrimidin-4-yl}amino)-D-ribitol
Canonical SMILES:   OC[C@H](O)[C@H](O)[C@H](O)CNc1c(/N=C/C=O)c(=O)[nH]c(=O)[nH]1
Standard InChI:   InChI=1S/C11H16N4O7/c16-2-1-12-7-9(14-11(22)15-10(7)21)13-3-5(18)8(20)6(19)4-17/h1-2,5-6,8,17-20H,3-4H2,(H3,13,14,15,21,22)/b12-1+/t5-,6+,8-/m1/s1
HET Code:   2L4 PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C11H16N4O7 Mol. Weight:   316.1019 logP:   -3.5487
HBD:   7 HBA:   9
#Rotatable Bonds:   8 TPSA:   188.1
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Imine Condensation LYS 43 A 17.24 5.51 Aldehyde
Binding Affinity
-