PDB Entry (3tdf)
PDB ID: 3tdf Resolution: 1.99 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: -
Protein
Protein Name: 4-hydroxy-tetrahydrodipicolinate synthase
Uniprot ID/ACC: D0CFC3 (D0CFC3_ACIB2) Organism: Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / CIP 70.34 / JCM 6841 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81)
Gene Symbol: dapA Gene ID: -
Protein Class: LYASE
Ligand
Ligand Name:   2-KETOBUTYRIC ACID
Canonical SMILES:   CCC(=O)C(O)=O
Standard InChI:   InChI=1S/C4H6O3/c1-2-3(5)4(6)7/h2H2,1H3,(H,6,7)
HET Code:   2KT PubChem:   58
DrugBank:   DB04553 ChEMBL:   CHEMBL171246
Molecular Formula:   C4H6O3 Mol. Weight:   102.03169 logP:   0.0501
HBD:   1 HBA:   2
#Rotatable Bonds:   2 TPSA:   54.37
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Imine Condensation LYS 161 A 12.08 6.82 Ketone
Binding Affinity
-