PDB Entry (3tdf) |
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PDB ID: 3tdf | Resolution: 1.99 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: - | |
Protein |
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Protein Name: 4-hydroxy-tetrahydrodipicolinate synthase | |
Uniprot ID/ACC: D0CFC3 (D0CFC3_ACIB2) | Organism: Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / CIP 70.34 / JCM 6841 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81) |
Gene Symbol: dapA | Gene ID: - |
Protein Class: LYASE |
Ligand |
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Ligand Name: 2-KETOBUTYRIC ACID | ||
Canonical SMILES: CCC(=O)C(O)=O | ||
Standard InChI: InChI=1S/C4H6O3/c1-2-3(5)4(6)7/h2H2,1H3,(H,6,7) | ||
HET Code: 2KT | PubChem: 58 | |
DrugBank: DB04553 | ChEMBL: CHEMBL171246 | |
Molecular Formula: C4H6O3 | Mol. Weight: 102.03169 | logP: 0.0501 |
HBD: 1 | HBA: 2 | |
#Rotatable Bonds: 2 | TPSA: 54.37 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Imine Condensation | LYS 161 | A | 12.08 | 6.82 | Ketone |
Binding Affinity |
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