PDB Entry (4pa8) |
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PDB ID: 4pa8 | Resolution: 1.2 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 25777153 | DOI: 10.1002/anie.201500217 | |
Protein |
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Protein Name: retro-aldolase | |
Uniprot ID/ACC: - | Organism: Saccharolobus solfataricus |
Gene Symbol: - | Gene ID: - |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: (3R)-3-(4-methoxyphenyl)-5-oxohexanenitrile | ||
Canonical SMILES: CC(=O)C[C@@H](CC#N)c1ccc(cc1)OC | ||
Standard InChI: InChI=1S/C13H15NO2/c1-10(15)9-12(7-8-14)11-3-5-13(16-2)6-4-11/h3-6,12H,7,9H2,1-2H3/t12-/m1/s1 | ||
HET Code: 2K6 | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C13H15NO2 | Mol. Weight: 217.11028 | logP: 2.67158 |
HBD: 0 | HBA: 3 | |
#Rotatable Bonds: 5 | TPSA: 50.09 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Imine Condensation | LYS 1083 | A | 36.74 | 6.22 | Ketone |
Binding Affinity |
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