PDB Entry (4pa8)
PDB ID: 4pa8 Resolution: 1.2 Å Exp. Method: X-RAY DIFFRACTION
PMID: 25777153 DOI: 10.1002/anie.201500217
Protein
Protein Name: retro-aldolase
Uniprot ID/ACC: - Organism: Saccharolobus solfataricus
Gene Symbol: - Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   (3R)-3-(4-methoxyphenyl)-5-oxohexanenitrile
Canonical SMILES:   CC(=O)C[C@@H](CC#N)c1ccc(cc1)OC
Standard InChI:   InChI=1S/C13H15NO2/c1-10(15)9-12(7-8-14)11-3-5-13(16-2)6-4-11/h3-6,12H,7,9H2,1-2H3/t12-/m1/s1
HET Code:   2K6 PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C13H15NO2 Mol. Weight:   217.11028 logP:   2.67158
HBD:   0 HBA:   3
#Rotatable Bonds:   5 TPSA:   50.09
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Imine Condensation LYS 1083 A 36.74 6.22 Ketone
Binding Affinity
-