PDB Entry (5gk1) |
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PDB ID: 5gk1 | Resolution: 1.83 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 27866911 | DOI: 10.1016/j.chembiol.2016.10.010 | |
Protein |
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Protein Name: ACP_syn_III_C domain-containing protein | |
Uniprot ID/ACC: Q7N4Z6 (Q7N4Z6_PHOLL) | Organism: Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) |
Gene Symbol: plu2164 | Gene ID: - |
Protein Class: TRANSFERASE |
Ligand |
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Ligand Name: isovaleryl-b-keto-SNAC | ||
Canonical SMILES: O=C(C)NCCSC(=O)CC(=O)CC(C)C | ||
Standard InChI: InChI=1S/C11H19NO3S/c1-8(2)6-10(14)7-11(15)16-5-4-12-9(3)13/h8H,4-7H2,1-3H3,(H,12,13) | ||
HET Code: 2K3 | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C11H19NO3S | Mol. Weight: 245.10857 | logP: 1.3876 |
HBD: 1 | HBA: 4 | |
#Rotatable Bonds: 7 | TPSA: 63.24 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Acyl Substitution | CYS 126 | A | 17.63 | 14.87 | Thioster |
Binding Affinity |
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