PDB Entry (5gk1)
PDB ID: 5gk1 Resolution: 1.83 Å Exp. Method: X-RAY DIFFRACTION
PMID: 27866911 DOI: 10.1016/j.chembiol.2016.10.010
Protein
Protein Name: ACP_syn_III_C domain-containing protein
Uniprot ID/ACC: Q7N4Z6 (Q7N4Z6_PHOLL) Organism: Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Gene Symbol: plu2164 Gene ID: -
Protein Class: TRANSFERASE
Ligand
Ligand Name:   isovaleryl-b-keto-SNAC
Canonical SMILES:   O=C(C)NCCSC(=O)CC(=O)CC(C)C
Standard InChI:   InChI=1S/C11H19NO3S/c1-8(2)6-10(14)7-11(15)16-5-4-12-9(3)13/h8H,4-7H2,1-3H3,(H,12,13)
HET Code:   2K3 PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C11H19NO3S Mol. Weight:   245.10857 logP:   1.3876
HBD:   1 HBA:   4
#Rotatable Bonds:   7 TPSA:   63.24
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Acyl Substitution CYS 126 A 17.63 14.87 Thioster
Binding Affinity
-