PDB Entry (4ez8)
PDB ID: 4ez8 Resolution: 1.17 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: -
Protein
Protein Name: Thymidylate synthase
Uniprot ID/ACC: P07607 (TYSY_MOUSE) Organism: Mus musculus (Mouse)
Gene Symbol: Tyms Gene ID: 22171
Protein Class: TRANSFERASE
Ligand
Ligand Name:   N(4)-hydroxy-2'-deoxycytidine-5'-monophosphate
Canonical SMILES:   ONc1ccn([C@H]2C[C@H](O)[C@@H](COP(O)(O)=O)O2)c(=O)n1
Standard InChI:   InChI=1S/C9H14N3O8P/c13-5-3-8(20-6(5)4-19-21(16,17)18)12-2-1-7(11-15)10-9(12)14/h1-2,5-6,8,13,15H,3-4H2,(H,10,11,14)(H2,16,17,18)/t5-,6+,8+/m0/s1
HET Code:   NOH PubChem:   159652
DrugBank:   - ChEMBL:   CHEMBL1161227
Molecular Formula:   C9H14N3O8P Mol. Weight:   323.05185 logP:   -1.1979
HBD:   5 HBA:   9
#Rotatable Bonds:   5 TPSA:   163.37
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 189 A 30.5 14.36 Pyrimidin-2-one
Binding Affinity
-