PDB Entry (3bfi) |
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PDB ID: 3bfi | Resolution: 2.2 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: - | |
Protein |
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Protein Name: Thymidylate synthase | |
Uniprot ID/ACC: P0A884 (TYSY_ECOLI) | Organism: Escherichia coli (strain K12) |
Gene Symbol: thyA | Gene ID: 58461970 |
Protein Class: TRANSFERASE |
Ligand |
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Ligand Name: 5-NO2dUMP | ||
Canonical SMILES: O[C@H]1C[C@@H](O[C@@H]1COP(O)(O)=O)n1cc([N+]([O-])=O)c(=O)[nH]c1=O | ||
Standard InChI: InChI=1S/C9H12N3O10P/c13-5-1-7(22-6(5)3-21-23(18,19)20)11-2-4(12(16)17)8(14)10-9(11)15/h2,5-7,13H,1,3H2,(H,10,14,15)(H2,18,19,20)/t5-,6+,7+/m0/s1 | ||
HET Code: NDU | PubChem: 149015 | |
DrugBank: - | ChEMBL: CHEMBL1234672 | |
Molecular Formula: C9H12N3O10P | Mol. Weight: 353.02603 | logP: -1.7975 |
HBD: 4 | HBA: 9 | |
#Rotatable Bonds: 5 | TPSA: 194.22 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Michael Addition | CYS 146 | A | 34.45 | 12.27 | Vinyl Carbonyl |
Binding Affinity |
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