PDB Entry (3b9h)
PDB ID: 3b9h Resolution: 2.49 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: -
Protein
Protein Name: Thymidylate synthase
Uniprot ID/ACC: P0A884 (TYSY_ECOLI) Organism: Escherichia coli (strain K12)
Gene Symbol: thyA Gene ID: 58461970
Protein Class: TRANSFERASE
Ligand
Ligand Name:   5-NO2dUMP
Canonical SMILES:   O[C@H]1C[C@@H](O[C@@H]1COP(O)(O)=O)n1cc([N+]([O-])=O)c(=O)[nH]c1=O
Standard InChI:   InChI=1S/C9H12N3O10P/c13-5-1-7(22-6(5)3-21-23(18,19)20)11-2-4(12(16)17)8(14)10-9(11)15/h2,5-7,13H,1,3H2,(H,10,14,15)(H2,18,19,20)/t5-,6+,7+/m0/s1
HET Code:   NDU PubChem:   149015
DrugBank:   - ChEMBL:   CHEMBL1234672
Molecular Formula:   C9H12N3O10P Mol. Weight:   353.02603 logP:   -1.7975
HBD:   4 HBA:   9
#Rotatable Bonds:   5 TPSA:   194.22
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 146 A 35.87 12.31 Vinyl Carbonyl
Binding Affinity
-