PDB Entry (1w8y)
PDB ID: 1w8y Resolution: 2.4 Å Exp. Method: X-RAY DIFFRACTION
PMID: 15987687 DOI: 10.1074/JBC.M503271200
Protein
Protein Name: D-alanyl-D-alanine carboxypeptidase
Uniprot ID/ACC: P39045 (DAC_ACTSP) Organism: Actinomadura sp. (strain R39)
Gene Symbol: dac Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   NITROCEFIN
Canonical SMILES:   OC(=O)C1=C(CS[C@@H]2[C@H](NC(=O)Cc3cccs3)C(=O)N12)\C=C\c1ccc(cc1[N+]([O-])=O)[N+]([O-])=O
Standard InChI:   InChI=1S/C21H16N4O8S2/c26-16(9-14-2-1-7-34-14)22-17-19(27)23-18(21(28)29)12(10-35-20(17)23)4-3-11-5-6-13(24(30)31)8-15(11)25(32)33/h1-8,17,20H,9-10H2,(H,22,26)(H,28,29)/b4-3+/t17-,20-/m1/s1
HET Code:   NCF PubChem:   6436140
DrugBank:   DB11592 ChEMBL:   CHEMBL480517
Molecular Formula:   C21H16N4O8S2 Mol. Weight:   516.04095 logP:   2.559
HBD:   2 HBA:   9
#Rotatable Bonds:   8 TPSA:   172.99
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Beta-Lactam Addition SER 49 D 19.95 - Beta-Lactam
Binding Affinity
-