PDB Entry (6ovz) |
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PDB ID: 6ovz | Resolution: 2.02 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31145588 | DOI: 10.1021/acs.biochem.9b00393 | |
Protein |
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Protein Name: Beta-lactamase | |
Uniprot ID/ACC: E5KIY2 (E5KIY2_ECOLX) | Organism: Escherichia coli |
Gene Symbol: blaNDM1 | Gene ID: 58729008 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: benzyl (carboxyoxy)carbamate | ||
Canonical SMILES: OC(=O)ONC(=O)OCc1ccccc1 | ||
Standard InChI: InChI=1S/C9H9NO5/c11-8(10-15-9(12)13)14-6-7-4-2-1-3-5-7/h1-5H,6H2,(H,10,11)(H,12,13) | ||
HET Code: N9M | PubChem: 17775114 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C9H9NO5 | Mol. Weight: 211.04807 | logP: 1.5224 |
HBD: 2 | HBA: 4 | |
#Rotatable Bonds: 2 | TPSA: 84.86 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Acyl Substitution | LYS 211 | A | 25.57 | 6.06 | O-Acyl Hydroxamic Acid |
Binding Affinity |
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