PDB Entry (6ovz)
PDB ID: 6ovz Resolution: 2.02 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31145588 DOI: 10.1021/acs.biochem.9b00393
Protein
Protein Name: Beta-lactamase
Uniprot ID/ACC: E5KIY2 (E5KIY2_ECOLX) Organism: Escherichia coli
Gene Symbol: blaNDM1 Gene ID: 58729008
Protein Class: HYDROLASE
Ligand
Ligand Name:   benzyl (carboxyoxy)carbamate
Canonical SMILES:   OC(=O)ONC(=O)OCc1ccccc1
Standard InChI:   InChI=1S/C9H9NO5/c11-8(10-15-9(12)13)14-6-7-4-2-1-3-5-7/h1-5H,6H2,(H,10,11)(H,12,13)
HET Code:   N9M PubChem:   17775114
DrugBank:   - ChEMBL:   -
Molecular Formula:   C9H9NO5 Mol. Weight:   211.04807 logP:   1.5224
HBD:   2 HBA:   4
#Rotatable Bonds:   2 TPSA:   84.86
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Acyl Substitution LYS 211 A 25.57 6.06 O-Acyl Hydroxamic Acid
Binding Affinity
-