PDB Entry (3d1l) |
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PDB ID: 3d1l | Resolution: 2.19 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: - | |
Protein |
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Protein Name: Glutamyl-tRNA reductase | |
Uniprot ID/ACC: Q5LAQ6 (Q5LAQ6_BACFN) | Organism: Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343) |
Gene Symbol: BF9343_3036 | Gene ID: - |
Protein Class: OXIDOREDUCTASE |
Ligand |
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Ligand Name: 2-MERCAPTO-PROPIONALDEHYDE | ||
Canonical SMILES: O=CCCS | ||
Standard InChI: InChI=1S/C3H6OS/c4-2-1-3-5/h2,5H,1,3H2 | ||
HET Code: MPR | PubChem: 527448 | |
DrugBank: - | ChEMBL: CHEMBL1234445 | |
Molecular Formula: C3H6OS | Mol. Weight: 90.01394 | logP: 0.5052 |
HBD: 1 | HBA: 2 | |
#Rotatable Bonds: 2 | TPSA: 17.07 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Disulfide Formation | CYS 179 | A | 22.07 | 99.99 | Thiol |
Binding Affinity |
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