PDB Entry (3d1l)
PDB ID: 3d1l Resolution: 2.19 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: -
Protein
Protein Name: Glutamyl-tRNA reductase
Uniprot ID/ACC: Q5LAQ6 (Q5LAQ6_BACFN) Organism: Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343)
Gene Symbol: BF9343_3036 Gene ID: -
Protein Class: OXIDOREDUCTASE
Ligand
Ligand Name:   2-MERCAPTO-PROPIONALDEHYDE
Canonical SMILES:   O=CCCS
Standard InChI:   InChI=1S/C3H6OS/c4-2-1-3-5/h2,5H,1,3H2
HET Code:   MPR PubChem:   527448
DrugBank:   - ChEMBL:   CHEMBL1234445
Molecular Formula:   C3H6OS Mol. Weight:   90.01394 logP:   0.5052
HBD:   1 HBA:   2
#Rotatable Bonds:   2 TPSA:   17.07
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Disulfide Formation CYS 179 A 22.07 99.99 Thiol
Binding Affinity
-