PDB Entry (4mz4)
PDB ID: 4mz4 Resolution: 1.63 Å Exp. Method: X-RAY DIFFRACTION
PMID: 24252545 DOI: 10.1016/j.bmcl.2013.10.060
Protein
Protein Name: Genome polyprotein
Uniprot ID/ACC: O92972 (POLG_HCVJ4) Organism: Hepatitis C virus genotype 1b (strain HC-J4) (HCV)
Gene Symbol: - Gene ID: -
Protein Class: TRANSFERASE
Ligand
Ligand Name:   1-[(2-chloroquinolin-3-yl)methyl]-6-fluoro-5-methyl-3-(2-oxo-1,2-dihydropyridin-3-yl)-1H-indole-2-carboxylic acid
Canonical SMILES:   Cc1cc2c(c(C(O)=O)n(Cc3cc4ccccc4nc3Cl)c2cc1F)-c1ccc[nH]c1=O
Standard InChI:   InChI=1S/C25H17ClFN3O3/c1-13-9-17-20(11-18(13)27)30(12-15-10-14-5-2-3-7-19(14)29-23(15)26)22(25(32)33)21(17)16-6-4-8-28-24(16)31/h2-11H,12H2,1H3,(H,28,31)(H,32,33)
HET Code:   2F3 PubChem:   25226377
DrugBank:   - ChEMBL:   CHEMBL3092124
Molecular Formula:   C25H17ClFN3O3 Mol. Weight:   461.09424 logP:   5.39222
HBD:   2 HBA:   4
#Rotatable Bonds:   4 TPSA:   87.98
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aromatic Substitution CYS 366 A 48.61 15.51 Aryl Halide
Binding Affinity
Database Name Value
PDBBind IC50 : 13 nM