PDB Entry (4pkb) |
||
| ||
PDB ID: 4pkb | Resolution: 2.09 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 25248161 | DOI: 10.1371/journal.pone.0108245 | |
Protein |
|
Protein Name: Patatin-17 | |
Uniprot ID/ACC: Q8LPW4 (PAT17_SOLCD) | Organism: Solanum cardiophyllum (Heartleaf nightshade) (Solanum cardiophyllum Lindl.) |
Gene Symbol: - | Gene ID: - |
Protein Class: HYDROLASE |
Ligand |
||
Ligand Name: METHYL ARACHIDONYL FLUOROPHOSPHONATE | ||
Canonical SMILES: CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCC[P@@](=O)(F)OC | ||
Standard InChI: InChI=1S/C21H36FO2P/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-25(22,23)24-2/h7-8,10-11,13-14,16-17H,3-6,9,12,15,18-21H2,1-2H3/b8-7-,11-10-,14-13-,17-16-/t25-/m0/s1 | ||
HET Code: MAY | PubChem: 92536013 | |
DrugBank: DB02465 | ChEMBL: - | |
Molecular Formula: C21H36FO2P | Mol. Weight: 370.24368 | logP: 7.9411 |
HBD: 0 | HBA: 2 | |
#Rotatable Bonds: 16 | TPSA: 26.3 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Phosphorylation | SER 77 | A | 9.56 | - | Phosphonohalogenate |
Binding Affinity |
|
Database Name | Value |
PDBBind | IC50 : 116 nM |