PDB Entry (6och) |
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PDB ID: 6och | Resolution: 2.0 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31235910 | DOI: 10.1038/s41594-019-0242-x | |
Protein |
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Protein Name: Tubulinyl-Tyr carboxypeptidase 1 | |
Uniprot ID/ACC: Q7L8A9 (VASH1_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: VASH1 | Gene ID: 22846 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: parthenolide | ||
Canonical SMILES: C1C/C=C(/C)CC[C@@H](C(C(O2)=O)=C)[C@H]2[C@H](O3)[C@]13C | ||
Standard InChI: InChI=1S/C15H20O3/c1-9-5-4-8-15(3)13(18-15)12-11(7-6-9)10(2)14(16)17-12/h5,11-13H,2,4,6-8H2,1,3H3/b9-5-/t11-,12-,13-,15-/m0/s1 | ||
HET Code: M4Y | PubChem: 5420807 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C15H20O3 | Mol. Weight: 248.14125 | logP: 2.762 |
HBD: 0 | HBA: 3 | |
#Rotatable Bonds: 0 | TPSA: 38.83 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Michael Addition | CYS 169 | A | 27.28 | 11.97 | Vinyl Carbonyl |
Binding Affinity |
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