PDB Entry (6och)
PDB ID: 6och Resolution: 2.0 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31235910 DOI: 10.1038/s41594-019-0242-x
Protein
Protein Name: Tubulinyl-Tyr carboxypeptidase 1
Uniprot ID/ACC: Q7L8A9 (VASH1_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: VASH1 Gene ID: 22846
Protein Class: HYDROLASE
Ligand
Ligand Name:   parthenolide
Canonical SMILES:   C1C/C=C(/C)CC[C@@H](C(C(O2)=O)=C)[C@H]2[C@H](O3)[C@]13C
Standard InChI:   InChI=1S/C15H20O3/c1-9-5-4-8-15(3)13(18-15)12-11(7-6-9)10(2)14(16)17-12/h5,11-13H,2,4,6-8H2,1,3H3/b9-5-/t11-,12-,13-,15-/m0/s1
HET Code:   M4Y PubChem:   5420807
DrugBank:   - ChEMBL:   -
Molecular Formula:   C15H20O3 Mol. Weight:   248.14125 logP:   2.762
HBD:   0 HBA:   3
#Rotatable Bonds:   0 TPSA:   38.83
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 169 A 27.28 11.97 Vinyl Carbonyl
Binding Affinity
-