PDB Entry (3pdf)
PDB ID: 3pdf Resolution: 1.85 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: -
Protein
Protein Name: Dipeptidyl peptidase 1
Uniprot ID/ACC: P53634 (CATC_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: CTSC Gene ID: 1075
Protein Class: HYDROLASE
Ligand
Ligand Name:   2,5-dibromo-N-[(3R,5S)-1-cyano-5-methylpyrrolidin-3-yl]benzene-1-sulfonamide
Canonical SMILES:   N#CN1C[C@@H](C[C@@H]1C)NS(=O)(=O)c2cc(Br)ccc2Br
Standard InChI:   InChI=1S/C12H13Br2N3O2S/c1-8-4-10(6-17(8)7-15)16-20(18,19)12-5-9(13)2-3-11(12)14/h2-3,5,8,10,16H,4,6H2,1H3/t8-,10+/m0/s1
HET Code:   LXV PubChem:   25174148
DrugBank:   - ChEMBL:   CHEMBL1672434
Molecular Formula:   C12H13Br2N3O2S Mol. Weight:   420.90952 logP:   2.43378
HBD:   1 HBA:   4
#Rotatable Bonds:   3 TPSA:   73.2
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Addition to a Triple Bond CYS 234 A 20.32 11.64 Cyanamide
Binding Affinity
-