PDB Entry (6o8m) |
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PDB ID: 6o8m | Resolution: 1.46 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33106663 | DOI: 10.1038/s41589-020-00671-9 | |
Protein |
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Protein Name: Transcriptional regulator, ArsR family | |
Uniprot ID/ACC: D5AT91 (D5AT91_RHOCB) | Organism: Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) |
Gene Symbol: RCAP_rcc01453 | Gene ID: - |
Protein Class: TRANSCRIPTION REGULATOR |
Ligand |
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Ligand Name: tetramethylazodicarboxamide | ||
Canonical SMILES: CN(C)C(=O)/N=N/C(=O)N(C)C | ||
Standard InChI: InChI=1S/C6H12N4O2/c1-9(2)5(11)7-8-6(12)10(3)4/h1-4H3/b8-7+ | ||
HET Code: LSY | PubChem: 4278 | |
DrugBank: - | ChEMBL: CHEMBL1338900 | |
Molecular Formula: C6H12N4O2 | Mol. Weight: 172.09602 | logP: 0.8018 |
HBD: 0 | HBA: 2 | |
#Rotatable Bonds: 0 | TPSA: 65.34 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Addition to a Double Bond | CYS 107 | A | 88.13 | 9.67 | Hydrazide |
Binding Affinity |
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