PDB Entry (6o8m)
PDB ID: 6o8m Resolution: 1.46 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33106663 DOI: 10.1038/s41589-020-00671-9
Protein
Protein Name: Transcriptional regulator, ArsR family
Uniprot ID/ACC: D5AT91 (D5AT91_RHOCB) Organism: Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
Gene Symbol: RCAP_rcc01453 Gene ID: -
Protein Class: TRANSCRIPTION REGULATOR
Ligand
Ligand Name:   tetramethylazodicarboxamide
Canonical SMILES:   CN(C)C(=O)/N=N/C(=O)N(C)C
Standard InChI:   InChI=1S/C6H12N4O2/c1-9(2)5(11)7-8-6(12)10(3)4/h1-4H3/b8-7+
HET Code:   LSY PubChem:   4278
DrugBank:   - ChEMBL:   CHEMBL1338900
Molecular Formula:   C6H12N4O2 Mol. Weight:   172.09602 logP:   0.8018
HBD:   0 HBA:   2
#Rotatable Bonds:   0 TPSA:   65.34
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Addition to a Double Bond CYS 107 A 88.13 9.67 Hydrazide
Binding Affinity
-