PDB Entry (2g6w)
PDB ID: 2g6w Resolution: 2.14 Å Exp. Method: X-RAY DIFFRACTION
PMID: 16557306 DOI: 10.1039/b517922j
Protein
Protein Name: 8-amino-7-oxononanoate synthase
Uniprot ID/ACC: P12998 (BIOF_ECOLI) Organism: Escherichia coli (strain K12)
Gene Symbol: bioF Gene ID: 57728429
Protein Class: TRANSFERASE
Ligand
Ligand Name:   ({5-hydroxy-6-methyl-4-[(E)-[(2,2,2-trifluoroethyl)imino]methyl]pyridin-3-yl}methoxy)phosphonic acid
Canonical SMILES:   Cc1ncc(COP(O)(O)=O)c(\C=N\CC(F)(F)F)c1O
Standard InChI:   InChI=1S/C10H12F3N2O5P/c1-6-9(16)8(3-14-5-10(11,12)13)7(2-15-6)4-20-21(17,18)19/h2-3,16H,4-5H2,1H3,(H2,17,18,19)/b14-3+
HET Code:   LLF PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C10H12F3N2O5P Mol. Weight:   328.04358 logP:   1.68612
HBD:   3 HBA:   5
#Rotatable Bonds:   5 TPSA:   112.24
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution LYS 236 A 48.03 8.04 Alkyl Halide
Binding Affinity
-