PDB Entry (6sgd) |
||
| ||
PDB ID: 6sgd | Resolution: 2.0 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33479670 | DOI: 10.1039/d0md00074d | |
Protein |
|
Protein Name: Serine/threonine-protein kinase Nek2 | |
Uniprot ID/ACC: P51955 (NEK2_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: NEK2 | Gene ID: 4751 |
Protein Class: TRANSFERASE |
Ligand |
||
Ligand Name: 4-(6-Ethynyl-9H-purin-2-ylamino)benzenesulfonamide | ||
Canonical SMILES: NS(=O)(=O)c1ccc(cc1)Nc(nc(c23)[nH]cn3)nc2C#C | ||
Standard InChI: InChI=1S/C13H10N6O2S/c1-2-10-11-12(16-7-15-11)19-13(18-10)17-8-3-5-9(6-4-8)22(14,20)21/h1,3-7H,(H2,14,20,21)(H2,15,16,17,18,19) | ||
HET Code: LD5 | PubChem: 137640457 | |
DrugBank: - | ChEMBL: CHEMBL4074015 | |
Molecular Formula: C13H10N6O2S | Mol. Weight: 314.0586 | logP: 0.7252 |
HBD: 3 | HBA: 6 | |
#Rotatable Bonds: 3 | TPSA: 126.65 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Addition to a Triple Bond | CYS 22 | A | 40.01 | 11.6 | Alkyne |
Binding Affinity |
||
- |