PDB Entry (1gzg)
PDB ID: 1gzg Resolution: 1.66 Å Exp. Method: X-RAY DIFFRACTION
PMID: 12079382 DOI: 10.1016/S0022-2836(02)00472-2
Protein
Protein Name: Delta-aminolevulinic acid dehydratase
Uniprot ID/ACC: Q59643 (HEM2_PSEAE) Organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Gene Symbol: hemB Gene ID: 879701
Protein Class: LYASE
Ligand
Ligand Name:   5-fluorolevulinic acid
Canonical SMILES:   OC(=O)CCC(=O)CF
Standard InChI:   InChI=1S/C5H7FO3/c6-3-4(7)1-2-5(8)9/h1-3H2,(H,8,9)
HET Code:   LAF PubChem:   131153
DrugBank:   DB02828 ChEMBL:   CHEMBL1233952
Molecular Formula:   C5H7FO3 Mol. Weight:   134.03792 logP:   0.3898
HBD:   1 HBA:   2
#Rotatable Bonds:   4 TPSA:   54.37
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Imine Condensation LYS 205 A 11.95 2.73 Ketone
Binding Affinity
Database Name Value
PDBBind IC50 : 900000 nM