PDB Entry (1gzg) |
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PDB ID: 1gzg | Resolution: 1.66 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 12079382 | DOI: 10.1016/S0022-2836(02)00472-2 | |
Protein |
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Protein Name: Delta-aminolevulinic acid dehydratase | |
Uniprot ID/ACC: Q59643 (HEM2_PSEAE) | Organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) |
Gene Symbol: hemB | Gene ID: 879701 |
Protein Class: LYASE |
Ligand |
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Ligand Name: 5-fluorolevulinic acid | ||
Canonical SMILES: OC(=O)CCC(=O)CF | ||
Standard InChI: InChI=1S/C5H7FO3/c6-3-4(7)1-2-5(8)9/h1-3H2,(H,8,9) | ||
HET Code: LAF | PubChem: 131153 | |
DrugBank: DB02828 | ChEMBL: CHEMBL1233952 | |
Molecular Formula: C5H7FO3 | Mol. Weight: 134.03792 | logP: 0.3898 |
HBD: 1 | HBA: 2 | |
#Rotatable Bonds: 4 | TPSA: 54.37 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Imine Condensation | LYS 205 | A | 11.95 | 2.73 | Ketone |
Binding Affinity |
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Database Name | Value |
PDBBind | IC50 : 900000 nM |