PDB Entry (6nzg)
PDB ID: 6nzg Resolution: 2.43 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31774274 DOI: 10.1021/acschembio.9b00788
Protein
Protein Name: DUF4982 domain-containing protein
Uniprot ID/ACC: A0A414F142 (A0A414F142_BACUN) Organism: Bacteroides uniformis
Gene Symbol: DW795_10005 Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   cyclophellitol-6-carboxylate aziridine
Canonical SMILES:   O[C@H]1[C@@H]2N[C@@H]2[C@@H]([C@@H](O)[C@@H]1O)C(O)=O
Standard InChI:   InChI=1S/C7H11NO5/c9-4-1(7(12)13)2-3(8-2)5(10)6(4)11/h1-6,8-11H,(H,12,13)/t1-,2+,3+,4+,5-,6-/m0/s1
HET Code:   L9D PubChem:   126961867
DrugBank:   - ChEMBL:   -
Molecular Formula:   C7H11NO5 Mol. Weight:   189.06372 logP:   -2.8761
HBD:   5 HBA:   5
#Rotatable Bonds:   1 TPSA:   119.93
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Aziridine Opening GLU 526 A 13.37 9.7 Aziridine
Binding Affinity
-