PDB Entry (2id8)
PDB ID: 2id8 Resolution: 1.27 Å Exp. Method: X-RAY DIFFRACTION
PMID: 17139083 DOI: 10.1107/S0907444906038534
Protein
Protein Name: Proteinase K
Uniprot ID/ACC: P06873 (PRTK_PARAQ) Organism: Parengyodontium album (Tritirachium album)
Gene Symbol: PROK Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   [(2S)-2,3-dihydroxypropoxy]boronic acid
Canonical SMILES:   OC[C@H](O)COB(O)O
Standard InChI:   InChI=1S/C3H9BO5/c5-1-3(6)2-9-4(7)8/h3,5-8H,1-2H2/t3-/m0/s1
HET Code:   2DB PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C3H9BO5 Mol. Weight:   136.0543 logP:   -2.6743
HBD:   4 HBA:   5
#Rotatable Bonds:   4 TPSA:   90.15
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Borylation SER 224 A 12.86 - Borate
Binding Affinity
-