PDB Entry (2id8) |
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PDB ID: 2id8 | Resolution: 1.27 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 17139083 | DOI: 10.1107/S0907444906038534 | |
Protein |
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Protein Name: Proteinase K | |
Uniprot ID/ACC: P06873 (PRTK_PARAQ) | Organism: Parengyodontium album (Tritirachium album) |
Gene Symbol: PROK | Gene ID: - |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: [(2S)-2,3-dihydroxypropoxy]boronic acid | ||
Canonical SMILES: OC[C@H](O)COB(O)O | ||
Standard InChI: InChI=1S/C3H9BO5/c5-1-3(6)2-9-4(7)8/h3,5-8H,1-2H2/t3-/m0/s1 | ||
HET Code: 2DB | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C3H9BO5 | Mol. Weight: 136.0543 | logP: -2.6743 |
HBD: 4 | HBA: 5 | |
#Rotatable Bonds: 4 | TPSA: 90.15 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Borylation | SER 224 | A | 12.86 | - | Borate |
Binding Affinity |
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