PDB Entry (3zmi) |
||
| ||
PDB ID: 3zmi | Resolution: 2.2 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 23665170 | DOI: 10.1016/J.STR.2013.03.013 | |
Protein |
|
Protein Name: Rhomboid protease GlpG | |
Uniprot ID/ACC: P09391 (GLPG_ECOLI) | Organism: Escherichia coli (strain K12) |
Gene Symbol: glpG | Gene ID: 58460244 |
Protein Class: HYDROLASE |
Ligand |
||
Ligand Name: monobactam L29 | ||
Canonical SMILES: c1ccccc1OC(=O)N2[C@H](CC2=O)c3ccccc3 | ||
Standard InChI: InChI=1S/C16H13NO3/c18-15-11-14(12-7-3-1-4-8-12)17(15)16(19)20-13-9-5-2-6-10-13/h1-10,14H,11H2/t14-/m1/s1 | ||
HET Code: L6C | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C16H13NO3 | Mol. Weight: 267.08954 | logP: 3.159 |
HBD: 0 | HBA: 3 | |
#Rotatable Bonds: 2 | TPSA: 46.61 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Beta-Lactam Addition | SER 201 | A | 26.63 | - | Beta-Lactam |
Binding Affinity |
|
Database Name | Value |
PDBBind | IC50 : 1117 nM |