PDB Entry (6s9w)
PDB ID: 6s9w Resolution: 2.3 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31584233 DOI: 10.1002/anie.201909857
Protein
Protein Name: RAC-alpha serine/threonine-protein kinase
Uniprot ID/ACC: P31749 (AKT1_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: AKT1 Gene ID: 207
Protein Class: TRANSFERASE
Ligand
Ligand Name:   N-[3-(1-{[4-(5-methyl-6-oxo-3-phenyl-1,6-dihydropyrazin-2-yl)phenyl]methyl}piperidin-4-yl)-2-oxo-2,3-dihydro-1H-1,3-benzodiazol-5-yl]prop-2-enamide
Canonical SMILES:   Cc1nc(-c2ccccc2)c([nH]c1=O)-c1ccc(CN2CCC(CC2)n2c3cc(NC(=O)C=C)ccc3[nH]c2=O)cc1
Standard InChI:   InChI=1S/C33H32N6O3/c1-3-29(40)35-25-13-14-27-28(19-25)39(33(42)36-27)26-15-17-38(18-16-26)20-22-9-11-24(12-10-22)31-30(23-7-5-4-6-8-23)34-21(2)32(41)37-31/h3-14,19,26H,1,15-18,20H2,2H3,(H,35,40)(H,36,42)(H,37,41)
HET Code:   L1Z PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C33H32N6O3 Mol. Weight:   560.2536 logP:   5.01692
HBD:   3 HBA:   6
#Rotatable Bonds:   7 TPSA:   115.88
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 310 A 36.2 11.22 Vinyl Carbonyl
Binding Affinity
-