PDB Entry (6rni) |
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PDB ID: 6rni | Resolution: 1.54 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31413809 | DOI: 10.1021/acsmedchemlett.9b00261 | |
Protein |
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Protein Name: Dipeptidyl peptidase 1 | |
Uniprot ID/ACC: P53634 (CATC_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: CTSC | Gene ID: 1075 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: (2S,4S)-N-[(1S)-1-cyano-2-{4'-cyano-[1,1'-biphenyl]-4-yl}ethyl]-4-(methylsulfanyl)pyrrolidine-2-carboxamide | ||
Canonical SMILES: CS[C@@H]1CN[C@@H](C1)C(=O)N[C@@H](Cc1ccc(cc1)-c1ccc(cc1)C#N)C#N | ||
Standard InChI: InChI=1S/C22H22N4OS/c1-28-20-11-21(25-14-20)22(27)26-19(13-24)10-15-2-6-17(7-3-15)18-8-4-16(12-23)5-9-18/h2-9,19-21,25H,10-11,14H2,1H3,(H,26,27)/t19-,20-,21-/m0/s1 | ||
HET Code: KAQ | PubChem: 155543410 | |
DrugBank: - | ChEMBL: CHEMBL4561264 | |
Molecular Formula: C22H22N4OS | Mol. Weight: 390.15143 | logP: 2.86966 |
HBD: 2 | HBA: 5 | |
#Rotatable Bonds: 6 | TPSA: 88.71 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Addition to a Triple Bond | CYS 234 | B | 16.58 | 10.0 | Nitrile |
Binding Affinity |
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