PDB Entry (1h7p)
PDB ID: 1h7p Resolution: 1.64 Å Exp. Method: X-RAY DIFFRACTION
PMID: 11545591 DOI: 10.1006/JMBI.2001.4947
Protein
Protein Name: Delta-aminolevulinic acid dehydratase
Uniprot ID/ACC: P05373 (HEM2_YEAST) Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Gene Symbol: HEM2 Gene ID: 852842
Protein Class: LYASE
Ligand
Ligand Name:   4-KETO-5-AMINO-HEXANOIC
Canonical SMILES:   C[C@@H](N)C(=O)CCC(O)=O
Standard InChI:   InChI=1S/C6H11NO3/c1-4(7)5(8)2-3-6(9)10/h4H,2-3,7H2,1H3,(H,9,10)/t4-/m1/s1
HET Code:   KAH PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C6H11NO3 Mol. Weight:   145.0739 logP:   -0.2325
HBD:   2 HBA:   3
#Rotatable Bonds:   4 TPSA:   80.39
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemiaminalization LYS 263 A 14.14 4.47 Ketone
Binding Affinity
-