PDB Entry (6rne)
PDB ID: 6rne Resolution: 1.65 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31413809 DOI: 10.1021/acsmedchemlett.9b00261
Protein
Protein Name: Dipeptidyl peptidase 1
Uniprot ID/ACC: P53634 (CATC_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: CTSC Gene ID: 1075
Protein Class: HYDROLASE
Ligand
Ligand Name:   (2S,4S)-N-[(1S)-1-cyano-2-{4'-cyano-[1,1'-biphenyl]-4-yl}ethyl]-4-fluoropyrrolidine-2-carboxamide
Canonical SMILES:   F[C@@H]1CN[C@@H](C1)C(=O)N[C@@H](Cc1ccc(cc1)-c1ccc(cc1)C#N)C#N
Standard InChI:   InChI=1S/C21H19FN4O/c22-18-10-20(25-13-18)21(27)26-19(12-24)9-14-1-5-16(6-2-14)17-7-3-15(11-23)4-8-17/h1-8,18-20,25H,9-10,13H2,(H,26,27)/t18-,19-,20-/m0/s1
HET Code:   KA8 PubChem:   155565392
DrugBank:   - ChEMBL:   CHEMBL4579467
Molecular Formula:   C21H19FN4O Mol. Weight:   362.1543 logP:   2.47616
HBD:   2 HBA:   4
#Rotatable Bonds:   5 TPSA:   88.71
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Addition to a Triple Bond CYS 234 B 16.97 10.84 Nitrile
Binding Affinity
-