PDB Entry (6rne) |
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PDB ID: 6rne | Resolution: 1.65 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31413809 | DOI: 10.1021/acsmedchemlett.9b00261 | |
Protein |
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Protein Name: Dipeptidyl peptidase 1 | |
Uniprot ID/ACC: P53634 (CATC_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: CTSC | Gene ID: 1075 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: (2S,4S)-N-[(1S)-1-cyano-2-{4'-cyano-[1,1'-biphenyl]-4-yl}ethyl]-4-fluoropyrrolidine-2-carboxamide | ||
Canonical SMILES: F[C@@H]1CN[C@@H](C1)C(=O)N[C@@H](Cc1ccc(cc1)-c1ccc(cc1)C#N)C#N | ||
Standard InChI: InChI=1S/C21H19FN4O/c22-18-10-20(25-13-18)21(27)26-19(12-24)9-14-1-5-16(6-2-14)17-7-3-15(11-23)4-8-17/h1-8,18-20,25H,9-10,13H2,(H,26,27)/t18-,19-,20-/m0/s1 | ||
HET Code: KA8 | PubChem: 155565392 | |
DrugBank: - | ChEMBL: CHEMBL4579467 | |
Molecular Formula: C21H19FN4O | Mol. Weight: 362.1543 | logP: 2.47616 |
HBD: 2 | HBA: 4 | |
#Rotatable Bonds: 5 | TPSA: 88.71 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Addition to a Triple Bond | CYS 234 | B | 16.97 | 10.84 | Nitrile |
Binding Affinity |
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