PDB Entry (6rn7) |
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PDB ID: 6rn7 | Resolution: 1.66 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31413809 | DOI: 10.1021/acsmedchemlett.9b00261 | |
Protein |
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Protein Name: Dipeptidyl peptidase 1 | |
Uniprot ID/ACC: P53634 (CATC_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: CTSC | Gene ID: 1075 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: (2S)-N-[(1S)-1-cyano-2-{4'-cyano-[1,1'-biphenyl]-4-yl}ethyl]pyrrolidine-2-carboxamide | ||
Canonical SMILES: O=C(N[C@@H](Cc1ccc(cc1)-c1ccc(cc1)C#N)C#N)[C@@H]1CCCN1 | ||
Standard InChI: InChI=1S/C21H20N4O/c22-13-16-5-9-18(10-6-16)17-7-3-15(4-8-17)12-19(14-23)25-21(26)20-2-1-11-24-20/h3-10,19-20,24H,1-2,11-12H2,(H,25,26)/t19-,20-/m0/s1 | ||
HET Code: K9W | PubChem: 155561515 | |
DrugBank: - | ChEMBL: CHEMBL4570759 | |
Molecular Formula: C21H20N4O | Mol. Weight: 344.1637 | logP: 2.52816 |
HBD: 2 | HBA: 4 | |
#Rotatable Bonds: 5 | TPSA: 88.71 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Addition to a Triple Bond | CYS 234 | B | 16.69 | 10.23 | Nitrile |
Binding Affinity |
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