PDB Entry (6rn6)
PDB ID: 6rn6 Resolution: 2.4 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31413809 DOI: 10.1021/acsmedchemlett.9b00261
Protein
Protein Name: Dipeptidyl peptidase 1
Uniprot ID/ACC: P53634 (CATC_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: CTSC Gene ID: 1075
Protein Class: HYDROLASE
Ligand
Ligand Name:   (2S,4R)-N-[(1S)-2-{[1,1'-biphenyl]-4-yl}-1-cyanoethyl]-4-hydroxypyrrolidine-2-carboxamide
Canonical SMILES:   O[C@H]1CN[C@@H](C1)C(=O)N[C@@H](Cc1ccc(cc1)-c1ccccc1)C#N
Standard InChI:   InChI=1S/C20H21N3O2/c21-12-17(23-20(25)19-11-18(24)13-22-19)10-14-6-8-16(9-7-14)15-4-2-1-3-5-15/h1-9,17-19,22,24H,10-11,13H2,(H,23,25)/t17-,18+,19-/m0/s1
HET Code:   K9Q PubChem:   42641779
DrugBank:   - ChEMBL:   CHEMBL4538307
Molecular Formula:   C20H21N3O2 Mol. Weight:   335.1634 logP:   1.62728
HBD:   3 HBA:   4
#Rotatable Bonds:   5 TPSA:   85.15
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Addition to a Triple Bond CYS 234 E 16.71 10.51 Nitrile
Binding Affinity
-