PDB Entry (3orz) |
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PDB ID: 3orz | Resolution: 2.0 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 21430264 | DOI: 10.1073/pnas.1102376108 | |
Protein |
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Protein Name: 3-phosphoinositide-dependent protein kinase 1 | |
Uniprot ID/ACC: O15530 (PDPK1_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: PDPK1 | Gene ID: 5170 |
Protein Class: TRANSFERASE |
Ligand |
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Ligand Name: 1-[4-(3-chlorophenyl)piperazin-1-yl]-4-{[2-(dimethylamino)ethyl]disulfanyl}butan-1-one | ||
Canonical SMILES: CN(C)CCSSCCCC(=O)N1CCN(CC1)c1cccc(Cl)c1 | ||
Standard InChI: InChI=1S/C18H28ClN3OS2/c1-20(2)12-14-25-24-13-4-7-18(23)22-10-8-21(9-11-22)17-6-3-5-16(19)15-17/h3,5-6,15H,4,7-14H2,1-2H3 | ||
HET Code: 2A2 | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C18H28ClN3OS2 | Mol. Weight: 401.13623 | logP: 3.7118 |
HBD: 0 | HBA: 5 | |
#Rotatable Bonds: 9 | TPSA: 26.79 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Disulfide Formation | CYS 148 | A | 31.82 | 99.99 | Disulfide |
Binding Affinity |
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