PDB Entry (3orz)
PDB ID: 3orz Resolution: 2.0 Å Exp. Method: X-RAY DIFFRACTION
PMID: 21430264 DOI: 10.1073/pnas.1102376108
Protein
Protein Name: 3-phosphoinositide-dependent protein kinase 1
Uniprot ID/ACC: O15530 (PDPK1_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: PDPK1 Gene ID: 5170
Protein Class: TRANSFERASE
Ligand
Ligand Name:   1-[4-(3-chlorophenyl)piperazin-1-yl]-4-{[2-(dimethylamino)ethyl]disulfanyl}butan-1-one
Canonical SMILES:   CN(C)CCSSCCCC(=O)N1CCN(CC1)c1cccc(Cl)c1
Standard InChI:   InChI=1S/C18H28ClN3OS2/c1-20(2)12-14-25-24-13-4-7-18(23)22-10-8-21(9-11-22)17-6-3-5-16(19)15-17/h3,5-6,15H,4,7-14H2,1-2H3
HET Code:   2A2 PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C18H28ClN3OS2 Mol. Weight:   401.13623 logP:   3.7118
HBD:   0 HBA:   5
#Rotatable Bonds:   9 TPSA:   26.79
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Disulfide Formation CYS 148 A 31.82 99.99 Disulfide
Binding Affinity
-