PDB Entry (3qgj) |
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PDB ID: 3qgj | Resolution: 1.3 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: - | |
Protein |
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Protein Name: Alpha-lytic protease | |
Uniprot ID/ACC: P00778 (PRLA_LYSEN) | Organism: Lysobacter enzymogenes |
Gene Symbol: alphaLP | Gene ID: - |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: N-acetyl-L-alanyl-L-alanyl-N-[(2S)-1-oxopropan-2-yl]-L-prolinamide | ||
Canonical SMILES: O=C(C)N[C@@H](C)C(=O)N[C@@H](C)C(=O)N1[C@@H](CCC1)C(=O)N[C@H](C=O)C | ||
Standard InChI: InChI=1S/C16H26N4O5/c1-9(8-21)17-15(24)13-6-5-7-20(13)16(25)11(3)19-14(23)10(2)18-12(4)22/h8-11,13H,5-7H2,1-4H3,(H,17,24)(H,18,22)(H,19,23)/t9-,10-,11-,13-/m0/s1 | ||
HET Code: 2A1 | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C16H26N4O5 | Mol. Weight: 354.1903 | logP: -1.2897 |
HBD: 3 | HBA: 5 | |
#Rotatable Bonds: 7 | TPSA: 124.68 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Hemi(thio)acetalization | SER 144 | A | 18.08 | - | Aldehyde |
Binding Affinity |
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